I'm afraid that I don't understand this diagram indicating that proteins go throuh metabolism and end up with biochemicals like carbohydrates. There are some mechanisms that carbohydrates can be switched into amino acids and vice versa, but there are also amino acids that human body can not produce. Plus how lipids can be made out of proteins...?（00:03:37 - 00:10:57）
Multiomics Data for Cancer Diagnosis (AlphaCare: Episode 3)

The amount of molecular biology datasets available are growing exponentially every month. Multiomics consist of all the layers of the molecular biome; the genome, epigenome, transcriptome, proteome, and metabolome. In this episode, we're going to learn how each of the layers of the molecular biology stack work, and then look at 3 different real world use cases for Cancer patients (diagnostic, prognostic, and predictive) using open-source python code on GitHub. Then we'll look at how a Generative Adversarial Network can be used to generate synthetic genomic data to battle imbalanced classes. Enjoy!

Big thanks to RapidAPI for sponsoring this video series:
https://rapidapi.com/hub?utm_source=Siraj-Raval&utm_medium=DevRel&utm_campaign=DevRel

Omics Datasets:
https://www.omicsdi.org/search

More Omics Datasets:
https://www.ncbi.nlm.nih.gov/geo/browse/?view=series&display=20&zsort=samples

Code Credits:
Example 1 (CITE-Seq autoencoder prognosis):
https://github.com/naity/citeseq_autoencoder

Example 2 (UMAP diagnosis):
https://github.com/NikolayOskolkov/UMAPDataIntegration

Example 3 (AlphaFold Protein Folding Prediction:
https://alphafold.ebi.ac.uk/
https://colab.research.google.com/github/sokrypton/ColabFold/blob/main/AlphaFold2.ipynb#scrollTo=KK7X9T44pWb7

Example 4 (GAN for Genomic Data Synthesis):
https://github.com/Unique-Divine/GANs-for-Genomics

Generative Biome HTML:
https://github.com/marpi/biomes

More Learning Resources:

AlphaCare Episode 1:
https://www.youtube.com/watch?v=fGv6VmfGMLc

AlphaCare Episode 2:
https://www.youtube.com/watch?v=PrqdEJZOrWE&t=10s

AlphaFold Tutorial:
https://www.youtube.com/watch?v=GQH-zWUylPY

How I Gamify Learning:
https://www.youtube.com/watch?v=nH85q7gC8uw

Learn Machine Learning in 3 months:
https://www.youtube.com/watch?v=Cr6VqTRO1v0

Multiomics Paper 1:
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7003173/

Multiomics Paper 2:
https://www.frontiersin.org/articles/10.3389/fgene.2020.610798/full

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https://twitter.com/sirajraval

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https://www.facebook.com/sirajologyyy

LINKEDIN:
https://www.linkedin.com/in/sirajraval/

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